Identification and Analysis of NBS-LRR Family Genes in Dioscorea opposita Based on Transcriptome Sequencing
LI Shunpeng1,LI Chaochuang1,2,WANG Lanning1,ZHANG Hao1,2,WANG Ruifei1,2,LI Mingjun1,3,YANG Qingxiang1,2*
1 College of Life Sciences,Henan Normal University,Xinxiang 453007,Henan,China;2 Henan International Joint Laboratory of Agricultural Microbia l Ecology and Technology,Xinxiang 453007,Henan,China;3 Engineering Technology Research Center of Nursing and Utilization of Genuine Chinese Crude Drugs of Henan Province,Xinxiang 453007,Henan,China
Abstract:To explore the role of NBS-LRR resistance genes in response to different fungal infections in ‘Tiegun’ yam,NBS-L RR genes DoRGA2 and DoRGA4 were amplified from the genome of ‘Tiegun’ yam by homologous cloning.RT-qPCR analysis revealed that the infection of the black spot disease pathogenic fungus Alternaria alternata and the endophytic fungus Penicillium halotolerans could induce the up-regulated expression of DoRGA2 and DoRGA4 in different degrees.Meanwhile,RNA-seq was performed to analyze the NBS-LRR family genes of ‘Tiegun’ callus infected by A. alternata and P. halotolerans,the results showed that a total of 47 NBS-LRR family genes were identified,including 5 types of N,NL,CN,CNL and TN,with 24,15,3,3 and 1 gene,respectively.Furthermore,different subfamilies of NBS-LRR proteins had diff erent evolutionary paths,and these proteins were mainly acidic proteins with hydrophilic properties,and were mainly located in the cell membrane or cytoplasm.In addition,among these NBS-LRR family genes,the expressions of TRINITY_DN9146_c0_g1,TRINITY_DN8009_c1_g1,TRINITY_DN49830_c0_g1 and TRINITY_DN39475_c0_g1 were significantly up-regulated after inoculation with A. alternata,while TRINITY_DN18700_c0_g3 was significantly up-regulated after infection with P. halotolerans.
李顺朋,李朝闯,王兰宁,张昊,王瑞飞,李明军,杨清香. 基于转录组测序的山药NBS-LRR家族基因鉴定和分析[J]. 中国蔬菜, 2024, 1(8): 47-57.
LI Shunpeng,LI Chaochuang,WANG Lanning,ZHANG Hao,WANG Ruifei,LI Mingjun,YANG Qingxiang. Identification and Analysis of NBS-LRR Family Genes in Dioscorea opposita Based on Transcriptome Sequencing . China Vegetables, 2024, 1(8): 47-57.