Abstract Super BSA was performed to screen SNP between 2 mixed DNA pools,which contained 100 pink tomatoes and 100 red tomatoes.SNPs of the tested result were analyzed.The result indicated that 6 SNPs among 127 SNPs on chromosome 1 were highly correlated with the color of tomato fruit,and 1 SNP was closely linked to pink tomato fruit.By this SNP,a polymorphism dCAPS was developed and showed well correlation with red,pink and heterozygous genotypes.It is recently reported that a 603 bp deletion was characterized at the upstream of SIMYB12 gene in pink tomato.Using this deletion,a InDel marker was developed and also showed good polymorphism among red,pink and heterozygous genotypes.These 2 newly developed molecular markers
were further used to analyze genetically the F2 population.The result was in line with the field observation.Their accordance rate was above 95%,which suggested that these 2 markers can be used for molecular marker assisted selection in tomato breeding.
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